How To Install Pyzmq On An Alpine Linux Container?

I have a container with the python:3.6-alpine kernel. I have a problem installing the pyzmq via pip on this: Dockerfile: FROM python:3.6-alpine RUN mkdir /code RUN apk add vim WOR

Solution 1:

Using py3-zmq package

From my experience, python:3.6-alpine is not well suited for installing packages with C extensions because of missing Python headers. The alpine images already offer a Python 3.6 distribution and also a precompiled pyzmq package, so it's already sufficient to do:

FROM alpine:edge

RUN apk update&& apk add py3-zmq

CMD ["/bin/sh"]

Check:

$ docker run --rm -it my/alpine /bin/sh
/ # python3 -c "import zmq; print(zmq.__version__)"
17.1.0

This is the easiest and most reliable way to install pyzmq in an Alpine container.

Building from source with pip install

Alpine is not manylinux1-compatible, so any package containing C extensions must be built from source. This means you have to install the build tools first. Again, I'd use alpine image instead of python:3.6-alpine:

FROM alpine:edge

RUN apk update && apk add build-base libzmq musl-dev python3 python3-dev zeromq-dev

RUN pip3 install pyzmq

# reduce image size by cleaning up the build packages
RUN apk del build-base musl-dev python3-dev zeromq-dev

CMD ["/bin/sh"]

Check:

$ docker run --rm -it my/alpine /bin/sh
/ # python3 -c "import zmq; print(zmq.__version__)"
17.1.0

If you insist on python:3.6-alpine

Beware that python:3.6-alpine does not install Python via apk, it has Python built from source and located under /usr/local. So when you inherit from python:3.6-alpine, install python3-dev and run pip install pyzmq, you'll end up with building pyzmq for Python 3.6.6 (coming from python:3.6-alpine) using header files from Python 3.6.4 (coming from apk add python3-dev). In general, this shouldn't be an issue (header files are incompatible only between major Python releases), but may become an issue in case the header files were adapted by the distro maintainer.

Edit: exact steps to reproduce, with log

$ docker image rm my/alpine:latest
Untagged: my/alpine:latest
Deleted:sha256:2e613cdc3c90c9d44b23d399bd44069217e5b31c1b4a8fc91e501c5226a4ef6a
Deleted:sha256:d66ac6c96a4fca9c4fe71a73b64a4dd3605a59e570f327974954649b633a7fc5
Deleted:sha256:114efba5527eb4ab23020ef84b6181b6a6ba790059b83ce046c9a1a6c0bdf419

$ docker image prune
WARNING! This will remove all dangling images.
Are you sure you want to continue? [y/N] y
Deleted Images:untagged: alpine@sha256:79c2c5f6db53da44f90bb2731f29f725b5b14c378407a123776b6d3c76e6aebe
untagged: alpine@sha256:ae8a1f9146d74466ddf1def02088ba33544db9aceef01f4b388c674a5ad1d00bdeleted:sha256:5c4fa780951b060bb0a75355765bc58112350d9974970d60561671d552aaf2e2
deleted:sha256:c9e8b5c053a2dda62373bc57fa8cb634230a92ba5f02d2baf5d35b932d04a878

Total reclaimed space:4.148MB

$ cat ./Dockerfile
FROM alpine:edge

RUN apk update && apk add py3-zmq

CMD ["/bin/sh"]

$ docker pull alpine:edge
edge: Pulling from library/alpine
a0710691c81a: Pull complete
Digest:sha256:8d9872bf7dc946db1b3cd2bf70752f59085ec3c5035ca1d820d30f1d1267d65d
Status: Downloaded newer image foralpine:edge

$ docker build -t my/alpine .
Sending build context to Docker daemon  3.072kB
Step 1/3 : FROM alpine:edge
 ---> 9d1f27787d39
Step 2/3 : RUN apk update && apk add py3-zmq
 ---> Running in 0f9bd971b5da
fetch http://dl-cdn.alpinelinux.org/alpine/edge/main/x86_64/APKINDEX.tar.gz
fetch http://dl-cdn.alpinelinux.org/alpine/edge/community/x86_64/APKINDEX.tar.gz
v3.8.0-1447-g6c9915aaa5 [http://dl-cdn.alpinelinux.org/alpine/edge/main]
v3.8.0-1459-g2ff55fde23 [http://dl-cdn.alpinelinux.org/alpine/edge/community]
OK:9626 distinct packages available
(1/16) Installing libbz2 (1.0.6-r6)
(2/16) Installing expat (2.2.5-r0)
(3/16) Installing libffi (3.2.1-r4)
(4/16) Installing gdbm (1.13-r1)
(5/16) Installing xz-libs (5.2.4-r0)
(6/16) Installing ncurses-terminfo-base (6.1-r0)
(7/16) Installing ncurses-terminfo (6.1-r0)
(8/16) Installing ncurses-libs (6.1-r0)
(9/16) Installing readline (7.0.003-r0)
(10/16) Installing sqlite-libs (3.24.0-r1)
(11/16) Installing python3 (3.6.4-r1)
(12/16) Installing libgcc (6.4.0-r8)
(13/16) Installing libsodium (1.0.16-r0)
(14/16) Installing libstdc++ (6.4.0-r8)
(15/16) Installing libzmq (4.2.3-r0)
(16/16) Installing py3-zmq (17.1.0-r0)
Executing busybox-1.28.4-r0.trigger
OK:69 MiB in29 packages
Removing intermediate container 0f9bd971b5da
 ---> 83a4db72581d
Step 3/3 : CMD ["/bin/sh"]
 ---> Running in b37e3ef8e639
Removing intermediate container b37e3ef8e639
 ---> 558bd6427c77
Successfully built 558bd6427c77
Successfully tagged my/alpine:latest

$ docker run --rm -it my/alpine python3 -c "import zmq; print(zmq.__version__)"17.1.0

Solution 2:

Check if this works better with python 3.7, as mentioned in zeromq/pyzmq issue 1050

The .c files were generated with Cython. It would appear that Python 3.7 has changed its C API, such that the .c files are no longer compatible with Python 3.7. We'll need to wait for a Cython release that fixes support for unreleased Python before we can use it.

Solution 3:

Thanks @hoefling, I fixed this dependency problem with install py3-pyzmq package first on Alpine Linux v3.12.

1. Run the docker container of Alpine 3.12.

   [ chusiang@macOS-11.0.1 ~ ]
   $ docker run -it --rm alpine:3 sh
   

2. Install the apk package of py3-pyzmq.

   /home # apk add py3-pyzmq
   (1/3) Installing libsodium (1.0.18-r0)
   (2/3) Installing libzmq (4.3.3-r0)
   (3/3) Installing py3-pyzmq (18.1.1-r0)
   OK: 385 MiB in 97 packages
   

3. Install pip3 package of jupyter notebook.

   /home # pip3 install jupyter

4. DONE !

   /home#  jupyter --versionjupyter core     :4.7.0jupyter-notebook :6.1.5qtconsole        :5.0.1ipython          :7.19.0ipykernel        :5.4.1jupyter client   :6.1.7jupyter lab      :notinstallednbconvert        :6.0.7ipywidgets       :7.5.1nbformat         :5.0.8traitlets        :5.0.5

By the way, I reference this post to upgrade the Python 2 -> 3 on my docker image project of "ansible-jupyter".

https://github.com/chusiang/ansible-jupyter.dockerfile/commit/200c9a48232b0149adb85fa9e5fc025730691599